This page links to code, data, and other resources.
Data and mathematical corrections
Corrections to Harte (2011), Maximum Entropy and Ecology: A Theory of Abundance, Distribution, and Energetics. Updated September 2019. Link.
Data for: Hembry, D.H., R. Raimundo, E.A. Newman, L. Atkinson, C. Guo, P.R. Guimãraes Jr., R.G. Gillespie (2018) Does biological intimacy shape ecological network structure? A test using a brood pollination mutualism on continental and oceanic islands. Journal of Animal Ecology 87(4): 1160-1171. Link.
Cite as: Hembry, David H. et al. (2019), Data from: Does biological intimacy shape ecological network structure? A test using a brood pollination mutualism on continental and oceanic islands, Dryad, Dataset, https://doi.org/10.5061/dryad.1224pr2
Data for: Newman, E.A., M.Q. Wilber, K.E. Kopper, M.A. Moritz, D.A. Falk, D. McKenzie, J. Harte. Disturbance macroecology: a comparative study of community structure metrics in a high severity disturbance regime. https://doi.org/10.1101/309419. Link.
Cite as: Newman, Erica; Wilber, Mark Q.; Kopper, Karen E.; Moritz, Max A.; Falk, Donald A.; McKenzie, Don; Harte, John. (2019): Disturbance Macroecology: Bishop Pine tree coring and location information from Point Reyes National Seashore, California, USA. figshare. Dataset. https://doi.org/10.6084/m9.figshare.11363051.v1
Data for: Newman, E.A., J.B. Potts, M.W. Tingley, C.E. Vaughn, S.L. Stephens (2018) Chaparral bird community responses to prescribed fire and mastication in three management seasons. Journal of Applied Ecology 52(3). Link.
Cite as: Newman, Erica A.; Potts, Jennifer B.; Tingley, Morgan W.; Vaughn, Charles; Stephens, Scott L. (2018): Newman et al, 2017. California chaparral bird community responses to wildfire management. Dryad. Dataset. https://doi.org/10.5061/dryad.mt3tr/1
Data for: Newman, E.A., C.A Winkler, and D.H. Hembry. (2018) Effects of anthropogenic wildfire activity in low elevation Pacific island vegetation communities in French Polynesia. PeerJ 6 (2018): e5114. Link.
Cite as: Newman, Erica A.; Hembry, David H.; Winkler, Carlea (2017): Plant species and abundance records for burned and unburned areas. figshare. Dataset. https://doi.org/10.6084/m9.figshare.5718325.v1
Data for: Newman, E.A., L. Eisen, R. Eisen, N. Fedorova, J.M. Hasty, C.E. Vaughn, R.S. Lane (2015) Borrelia burgdorferi sensu lato spirochetes in wild birds in northwestern California: Associations with ecological factors, bird behavior and tick infestation. PLOS ONE 10(2): e0118146. Link.
Cite as: A. Newman, Erica; Eisen, Lars; J. Eisen, Rebecca; Fedorova, Natalia; M. Hasty, Jeomhee; Vaughn, Charles; et al. (2015): Data from: Borrelia burgdorferi sensu lato spirochetes in wild birds in northwestern California: associations with ecological factors, bird behavior and tick infestation. Dryad. Collection. https://doi.org/10.5061/dryad.p3b61
Software packages and code
EcoNetGen in R: Simulate and Sample from Ecological Interaction Networks. Link to R package in CRAN.
Cite as: de Aguiar, M.A.M., E.A. Newman, M. Pires, & C. Boettiger. (2018, April 4). EcoNetGen: an R package to Simulate and Sample from Ecological Interaction Networks.
EcoNetGen in Python. Link.